{ "@context": { "@vocab": "https://schema.org/", "biolink": "https://w3id.org/biolink/", "orion": "https://github.com/RobokopU24/ORION" }, "@id": "https://kgx-storage.ci.transltr.io/releases/alliance/2026_06_09/", "@type": "Dataset", "name": "alliance", "description": "A knowledge graph built for the NCATS Biomedical Data Translator project using Translator-Ingests, Biolink Model, and Node Normalizer.", "license": "MIT", "url": "https://kgx-storage.ci.transltr.io/releases/alliance/2026_06_09/", "version": "alliance_9.0.0_78d4b40c_2025sep1_2.4.1_1.4.0_conflated_strict_2.0.0_4.4.2", "dateCreated": "2026_06_08", "dateModified": "", "keywords": [], "creator": [], "contactPoint": [], "funder": [], "conformsTo": [], "schema": { "nodes": [ { "category": [ "biolink:PhenotypicFeature" ], "count": 29, "id_prefixes": { "HP": 15, "EFO": 14 }, "attributes": { "name": 29, "equivalent_identifiers": 29, "information_content": 29, "description": 29 } }, { "category": [ "biolink:Disease" ], "count": 4, "id_prefixes": { "MONDO": 3, "EFO": 1 }, "attributes": { "name": 4, "equivalent_identifiers": 4, "information_content": 4, "description": 4 } }, { "category": [ "biolink:CellularComponent" ], "count": 565, "id_prefixes": { "GO": 565 }, "attributes": { "name": 565, "equivalent_identifiers": 565, "information_content": 565, "description": 565 } }, { "category": [ "biolink:Gene" ], "count": 669, "id_prefixes": { "NCBIGene": 567, "MGI": 101, "RGD": 1 }, "attributes": { "name": 669, "equivalent_identifiers": 669, "description": 567, "information_content": 86 } }, { "category": [ "biolink:Gene", "biolink:Protein" ], "count": 14247, "id_prefixes": { "NCBIGene": 14247 }, "attributes": { "name": 14247, "equivalent_identifiers": 14247, "description": 14247, "information_content": 13260 } }, { "category": [ "biolink:AnatomicalEntity" ], "count": 669, "id_prefixes": { "UBERON": 669 }, "attributes": { "name": 669, "equivalent_identifiers": 669, "information_content": 669, "description": 583 } } ], "nodes_summary": { "total_count": 16183, "id_prefixes": { "NCBIGene": 14814, "UBERON": 669, "GO": 565, "MGI": 101, "EFO": 15, "HP": 15, "MONDO": 3, "RGD": 1 }, "attributes": { "name": 16183, "equivalent_identifiers": 16183, "description": 15995, "information_content": 14613 } }, "edges": [ { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:expressed_in", "object_category": [ "biolink:AnatomicalEntity" ], "count": 118545, "primary_knowledge_sources": { "infores:mgi": 118545 }, "qualifiers": { "qualifier": 118545, "stage_qualifier": 118545 }, "attributes": { "id": 118545, "category": 118545, "publications": 118545, "knowledge_level": 118545, "agent_type": 118545, "original_subject": 118545, "original_object": 118545 }, "subject_id_prefixes": { "NCBIGene": 118545 }, "object_id_prefixes": { "UBERON": 118545 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:expressed_in", "object_category": [ "biolink:CellularComponent" ], "count": 6450, "primary_knowledge_sources": { "infores:rgd": 6450 }, "qualifiers": { "qualifier": 6450 }, "attributes": { "id": 6450, "category": 6450, "publications": 6450, "knowledge_level": 6450, "agent_type": 6450, "original_subject": 6450, "original_object": 6450 }, "subject_id_prefixes": { "NCBIGene": 6450 }, "object_id_prefixes": { "GO": 6450 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:has_phenotype", "object_category": [ "biolink:PhenotypicFeature" ], "count": 2579, "primary_knowledge_sources": { "infores:mgi": 2547, "infores:rgd": 32 }, "qualifiers": {}, "attributes": { "id": 2579, "category": 2579, "publications": 2579, "knowledge_level": 2579, "agent_type": 2579, "original_subject": 2579, "original_object": 2579 }, "subject_id_prefixes": { "NCBIGene": 2579 }, "object_id_prefixes": { "EFO": 1539, "HP": 1040 } }, { "subject_category": [ "biolink:Gene" ], "predicate": "biolink:expressed_in", "object_category": [ "biolink:AnatomicalEntity" ], "count": 2736, "primary_knowledge_sources": { "infores:mgi": 2736 }, "qualifiers": { "qualifier": 2736, "stage_qualifier": 2736 }, "attributes": { "id": 2736, "category": 2736, "publications": 2736, "knowledge_level": 2736, "agent_type": 2736, "original_subject": 2736, "original_object": 2736 }, "subject_id_prefixes": { "NCBIGene": 2525, "MGI": 211 }, "object_id_prefixes": { "UBERON": 2736 } }, { "subject_category": [ "biolink:Gene" ], "predicate": "biolink:expressed_in", "object_category": [ "biolink:CellularComponent" ], "count": 97, "primary_knowledge_sources": { "infores:rgd": 97 }, "qualifiers": { "qualifier": 97 }, "attributes": { "id": 97, "category": 97, "publications": 97, "knowledge_level": 97, "agent_type": 97, "original_subject": 97, "original_object": 97 }, "subject_id_prefixes": { "NCBIGene": 96, "RGD": 1 }, "object_id_prefixes": { "GO": 97 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:has_phenotype", "object_category": [ "biolink:Disease" ], "count": 44, "primary_knowledge_sources": { "infores:mgi": 42, "infores:rgd": 2 }, "qualifiers": {}, "attributes": { "id": 44, "category": 44, "publications": 44, "knowledge_level": 44, "agent_type": 44, "original_subject": 44, "original_object": 44 }, "subject_id_prefixes": { "NCBIGene": 44 }, "object_id_prefixes": { "MONDO": 43, "EFO": 1 } }, { "subject_category": [ "biolink:Gene" ], "predicate": "biolink:has_phenotype", "object_category": [ "biolink:PhenotypicFeature" ], "count": 90, "primary_knowledge_sources": { "infores:mgi": 88, "infores:rgd": 2 }, "qualifiers": {}, "attributes": { "id": 90, "category": 90, "publications": 90, "knowledge_level": 90, "agent_type": 90, "original_subject": 90, "original_object": 90 }, "subject_id_prefixes": { "MGI": 52, "NCBIGene": 38 }, "object_id_prefixes": { "EFO": 48, "HP": 42 } }, { "subject_category": [ "biolink:Gene" ], "predicate": "biolink:has_phenotype", "object_category": [ "biolink:Disease" ], "count": 4, "primary_knowledge_sources": { "infores:mgi": 4 }, "qualifiers": {}, "attributes": { "id": 4, "category": 4, "publications": 4, "knowledge_level": 4, "agent_type": 4, "original_subject": 4, "original_object": 4 }, "subject_id_prefixes": { "MGI": 4 }, "object_id_prefixes": { "MONDO": 4 } } ], "edges_summary": { "total_count": 130545, "predicates": { "biolink:expressed_in": 127828, "biolink:has_phenotype": 2717 }, "primary_knowledge_sources": { "infores:mgi": 123962, "infores:rgd": 6583 }, "predicates_by_knowledge_source": { "infores:mgi": { "biolink:expressed_in": 121281, "biolink:has_phenotype": 2681 }, "infores:rgd": { "biolink:expressed_in": 6547, "biolink:has_phenotype": 36 } }, "qualifiers": { "qualifier": 127828, "stage_qualifier": 121281 }, "attributes": { "id": 130545, "category": 130545, "publications": 130545, "knowledge_level": 130545, "agent_type": 130545, "original_subject": 130545, "original_object": 130545 } } }, "biolinkVersion": "4.4.2", "babelVersion": "2025sep1", "distribution": [], "hasPart": [], "isBasedOn": [ { "@type": "Dataset", "identifier": "alliance", "name": "Alliance of Genome Resources (AGR) Reference Ingest Guide", "description": "The Alliance of Genome Resources (AGR) is a consortium of model organism databases and the Gene Ontology Consortium that provides a unified view of gene function, biological processes, phenotypes, and disease associations across multiple model organisms. The AGR aggregates and harmonizes data from member databases including MGI (mouse), RGD (rat), SGD (yeast), WormBase (C. elegans), FlyBase (D. melanogaster), ZFIN (zebrafish), and Xenbase (X. laevis and X. tropicalis).", "license": { "terms_of_use_url": "https://www.alliancegenome.org/privacy-warranty-licensing", "license_name": "CC0 1.0 Universal", "license_url": "https://creativecommons.org/publicdomain/zero/1.0/" }, "url": [ "All downloads: https://www.alliancegenome.org/downloads", "FMS (File Management System): https://fms.alliancegenome.org/download/" ], "version": "9.0.0" } ] }