{
  "@context": {
    "@vocab": "https://schema.org/",
    "biolink": "https://w3id.org/biolink/",
    "orion": "https://github.com/RobokopU24/ORION"
  },
  "@id": "https://kgx-storage.ci.transltr.io/releases/bindingdb/1.0.0/",
  "@type": "Dataset",
  "name": "bindingdb",
  "description": "A knowledge graph built for the NCATS Biomedical Data Translator project using Translator-Ingests, Biolink Model, and Node Normalizer.",
  "license": "",
  "url": "https://kgx-storage.ci.transltr.io/releases/bindingdb/1.0.0/",
  "version": "bindingdb_202609_9ed61ce7_2025sep1_2.4.1_1.4.0_conflated_strict_2.0.0_4.4.4",
  "dateCreated": "2026-09-04T18:16:24Z",
  "dateModified": "",
  "keywords": [],
  "creator": [],
  "contactPoint": [],
  "funder": [],
  "conformsTo": [],
  "schema": {
    "nodes": [
      {
        "category": [
          "biolink:SmallMolecule"
        ],
        "count": 842775,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 835262,
          "CHEBI": 4141,
          "UNII": 3372
        },
        "attributes": {
          "name": 842775,
          "equivalent_identifiers": 842775,
          "information_content": 4140,
          "description": 1741
        }
      },
      {
        "category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "count": 997,
        "id_prefixes": {
          "CHEBI": 919,
          "UNII": 72,
          "PUBCHEM.COMPOUND": 6
        },
        "attributes": {
          "name": 997,
          "equivalent_identifiers": 997,
          "information_content": 913,
          "description": 721
        }
      },
      {
        "category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "count": 14,
        "id_prefixes": {
          "CHEBI": 11,
          "UNII": 3
        },
        "attributes": {
          "name": 14,
          "equivalent_identifiers": 14,
          "information_content": 11,
          "description": 7
        }
      },
      {
        "category": [
          "biolink:MolecularMixture"
        ],
        "count": 978,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 952,
          "UNII": 16,
          "CHEBI": 10
        },
        "attributes": {
          "name": 978,
          "equivalent_identifiers": 978,
          "information_content": 10,
          "description": 5
        }
      },
      {
        "category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 4051,
        "id_prefixes": {
          "NCBIGene": 4051
        },
        "attributes": {
          "name": 4051,
          "in_taxon": 4051,
          "in_taxon_label": 4051,
          "equivalent_identifiers": 4051,
          "description": 4051,
          "information_content": 3976
        }
      },
      {
        "category": [
          "biolink:ChemicalEntity"
        ],
        "count": 193,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 193
        },
        "attributes": {
          "name": 193,
          "equivalent_identifiers": 193
        }
      },
      {
        "category": [
          "biolink:Protein"
        ],
        "count": 153,
        "id_prefixes": {
          "UniProtKB": 153
        },
        "attributes": {
          "name": 153,
          "in_taxon": 153,
          "in_taxon_label": 153,
          "equivalent_identifiers": 153,
          "information_content": 109,
          "description": 109
        }
      }
    ],
    "nodes_summary": {
      "total_count": 849161,
      "id_prefixes": {
        "PUBCHEM.COMPOUND": 836413,
        "CHEBI": 5081,
        "NCBIGene": 4051,
        "UNII": 3463,
        "UniProtKB": 153
      },
      "attributes": {
        "name": 849161,
        "equivalent_identifiers": 849161,
        "information_content": 9159,
        "description": 6634,
        "in_taxon": 4204,
        "in_taxon_label": 4204
      }
    },
    "edges": [
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 1183490,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1183490
        },
        "qualifiers": {},
        "attributes": {
          "id": 1183490,
          "category": 1183490,
          "publications": 1183490,
          "knowledge_level": 1183490,
          "agent_type": 1183490,
          "has_supporting_studies": 1183490,
          "original_subject": 1183490,
          "original_object": 1183490
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 1159372,
          "CHEBI": 14967,
          "UNII": 9151
        },
        "object_id_prefixes": {
          "NCBIGene": 1183490
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 8477,
        "primary_knowledge_sources": {
          "infores:bindingdb": 8477
        },
        "qualifiers": {},
        "attributes": {
          "id": 8477,
          "category": 8477,
          "publications": 8477,
          "knowledge_level": 8477,
          "agent_type": 8477,
          "has_supporting_studies": 8477,
          "original_subject": 8477,
          "original_object": 8477
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 7944,
          "CHEBI": 355,
          "UNII": 178
        },
        "object_id_prefixes": {
          "UniProtKB": 8477
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 1359,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1359
        },
        "qualifiers": {},
        "attributes": {
          "id": 1359,
          "category": 1359,
          "publications": 1359,
          "knowledge_level": 1359,
          "agent_type": 1359,
          "has_supporting_studies": 1359,
          "original_subject": 1359,
          "original_object": 1359
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 1315,
          "CHEBI": 22,
          "UNII": 22
        },
        "object_id_prefixes": {
          "NCBIGene": 1359
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 6882,
        "primary_knowledge_sources": {
          "infores:bindingdb": 6882
        },
        "qualifiers": {},
        "attributes": {
          "id": 6882,
          "category": 6882,
          "publications": 6882,
          "knowledge_level": 6882,
          "agent_type": 6882,
          "has_supporting_studies": 6882,
          "original_subject": 6882,
          "original_object": 6882
        },
        "subject_id_prefixes": {
          "CHEBI": 6659,
          "UNII": 186,
          "PUBCHEM.COMPOUND": 37
        },
        "object_id_prefixes": {
          "NCBIGene": 6882
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:Drug"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 216,
        "primary_knowledge_sources": {
          "infores:bindingdb": 216
        },
        "qualifiers": {},
        "attributes": {
          "id": 216,
          "category": 216,
          "publications": 216,
          "knowledge_level": 216,
          "agent_type": 216,
          "has_supporting_studies": 216,
          "original_subject": 216,
          "original_object": 216
        },
        "subject_id_prefixes": {
          "CHEBI": 210,
          "UNII": 4,
          "PUBCHEM.COMPOUND": 2
        },
        "object_id_prefixes": {
          "UniProtKB": 216
        }
      },
      {
        "subject_category": [
          "biolink:ChemicalEntity"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 238,
        "primary_knowledge_sources": {
          "infores:bindingdb": 238
        },
        "qualifiers": {},
        "attributes": {
          "id": 238,
          "category": 238,
          "publications": 238,
          "knowledge_level": 238,
          "agent_type": 238,
          "has_supporting_studies": 238,
          "original_subject": 238,
          "original_object": 238
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 238
        },
        "object_id_prefixes": {
          "NCBIGene": 238
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 36,
        "primary_knowledge_sources": {
          "infores:bindingdb": 36
        },
        "qualifiers": {},
        "attributes": {
          "id": 36,
          "category": 36,
          "publications": 36,
          "knowledge_level": 36,
          "agent_type": 36,
          "has_supporting_studies": 36,
          "original_subject": 36,
          "original_object": 36
        },
        "subject_id_prefixes": {
          "CHEBI": 31,
          "UNII": 5
        },
        "object_id_prefixes": {
          "NCBIGene": 36
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 8,
        "primary_knowledge_sources": {
          "infores:bindingdb": 8
        },
        "qualifiers": {},
        "attributes": {
          "id": 8,
          "category": 8,
          "publications": 8,
          "knowledge_level": 8,
          "agent_type": 8,
          "has_supporting_studies": 8,
          "original_subject": 8,
          "original_object": 8
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 8
        },
        "object_id_prefixes": {
          "UniProtKB": 8
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule",
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 1,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1
        },
        "qualifiers": {},
        "attributes": {
          "id": 1,
          "category": 1,
          "publications": 1,
          "knowledge_level": 1,
          "agent_type": 1,
          "has_supporting_studies": 1,
          "original_subject": 1,
          "original_object": 1
        },
        "subject_id_prefixes": {
          "CHEBI": 1
        },
        "object_id_prefixes": {
          "UniProtKB": 1
        }
      }
    ],
    "edges_summary": {
      "total_count": 1200707,
      "predicates": {
        "biolink:directly_physically_interacts_with": 1200707
      },
      "primary_knowledge_sources": {
        "infores:bindingdb": 1200707
      },
      "predicates_by_knowledge_source": {
        "infores:bindingdb": {
          "biolink:directly_physically_interacts_with": 1200707
        }
      },
      "qualifiers": {},
      "attributes": {
        "id": 1200707,
        "category": 1200707,
        "publications": 1200707,
        "knowledge_level": 1200707,
        "agent_type": 1200707,
        "has_supporting_studies": 1200707,
        "original_subject": 1200707,
        "original_object": 1200707
      }
    }
  },
  "biolinkVersion": "4.4.4",
  "babelVersion": "2025sep1",
  "distribution": [],
  "hasPart": [],
  "isBasedOn": [
    {
      "@type": "Dataset",
      "identifier": "bindingdb",
      "name": "BindingDb",
      "description": "The Binding Database (\"BindingDb\") is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules. As of July 31, 2021, BindingDB contains thousands of dataset Entries, each with a DOI, containing millions of binding assay results for thousands of protein targets assayed against over a million distinct small molecule ligands.",
      "license": {
        "terms_of_use_description": "All data and download files in bindingDB are freely available under a 'Creative Commons BY 3.0' license."
      },
      "url": [
        "BindingDb bulk downloads - https://www.bindingdb.org/rwd/bind/downloads/"
      ],
      "version": "202609"
    }
  ]
}