{
  "@context": {
    "@vocab": "https://schema.org/",
    "biolink": "https://w3id.org/biolink/",
    "orion": "https://github.com/RobokopU24/ORION"
  },
  "@id": "https://kgx-storage.rtx.ai/releases/bindingdb/2026_05_07/",
  "@type": "Dataset",
  "name": "bindingdb",
  "description": "A knowledge graph built for the NCATS Biomedical Data Translator project using Translator-Ingests, Biolink Model, and Node Normalizer.",
  "license": "MIT",
  "url": "https://kgx-storage.rtx.ai/releases/bindingdb/2026_05_07/",
  "version": "bindingdb_202605_4490a80b_2025sep1_2.4.1_1.4.0_conflated_strict_2.0.0_4.3.7",
  "dateCreated": "2026_05_06",
  "dateModified": "",
  "keywords": [],
  "creator": [],
  "contactPoint": [],
  "funder": [],
  "conformsTo": [],
  "schema": {
    "nodes": [
      {
        "category": [
          "biolink:SmallMolecule"
        ],
        "count": 768014,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 760608,
          "CHEBI": 4081,
          "UNII": 3325
        },
        "attributes": {
          "name": 768014,
          "equivalent_identifiers": 768014,
          "information_content": 4080,
          "description": 1718
        }
      },
      {
        "category": [
          "biolink:Drug",
          "biolink:SmallMolecule"
        ],
        "count": 990,
        "id_prefixes": {
          "CHEBI": 914,
          "UNII": 70,
          "PUBCHEM.COMPOUND": 6
        },
        "attributes": {
          "name": 990,
          "equivalent_identifiers": 990,
          "information_content": 909,
          "description": 716
        }
      },
      {
        "category": [
          "biolink:MolecularMixture",
          "biolink:SmallMolecule"
        ],
        "count": 14,
        "id_prefixes": {
          "CHEBI": 11,
          "UNII": 3
        },
        "attributes": {
          "name": 14,
          "equivalent_identifiers": 14,
          "information_content": 11,
          "description": 7
        }
      },
      {
        "category": [
          "biolink:MolecularMixture"
        ],
        "count": 1020,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 992,
          "UNII": 18,
          "CHEBI": 10
        },
        "attributes": {
          "name": 1020,
          "equivalent_identifiers": 1020,
          "information_content": 10,
          "description": 5
        }
      },
      {
        "category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 4764,
        "id_prefixes": {
          "NCBIGene": 4764
        },
        "attributes": {
          "name": 4764,
          "in_taxon": 4764,
          "in_taxon_label": 4764,
          "equivalent_identifiers": 4764,
          "description": 4764,
          "information_content": 4694
        }
      },
      {
        "category": [
          "biolink:ChemicalEntity"
        ],
        "count": 153,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 153
        },
        "attributes": {
          "name": 153,
          "equivalent_identifiers": 153
        }
      },
      {
        "category": [
          "biolink:Protein"
        ],
        "count": 152,
        "id_prefixes": {
          "UniProtKB": 152
        },
        "attributes": {
          "name": 152,
          "in_taxon": 152,
          "in_taxon_label": 152,
          "equivalent_identifiers": 152,
          "information_content": 109,
          "description": 109
        }
      }
    ],
    "nodes_summary": {
      "total_count": 775107,
      "id_prefixes": {
        "PUBCHEM.COMPOUND": 761759,
        "CHEBI": 5016,
        "NCBIGene": 4764,
        "UNII": 3416,
        "UniProtKB": 152
      },
      "attributes": {
        "name": 775107,
        "equivalent_identifiers": 775107,
        "information_content": 9813,
        "description": 7319,
        "in_taxon": 4916,
        "in_taxon_label": 4916
      }
    },
    "edges": [
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 1082408,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1082408
        },
        "qualifiers": {},
        "attributes": {
          "id": 1082408,
          "category": 1082408,
          "publications": 1082408,
          "knowledge_level": 1082408,
          "agent_type": 1082408,
          "has_affinity": 1082408,
          "original_subject": 1082408,
          "original_object": 1082408
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 1058639,
          "CHEBI": 14825,
          "UNII": 8944
        },
        "object_id_prefixes": {
          "NCBIGene": 1082408
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 8230,
        "primary_knowledge_sources": {
          "infores:bindingdb": 8230
        },
        "qualifiers": {},
        "attributes": {
          "id": 8230,
          "category": 8230,
          "publications": 8230,
          "knowledge_level": 8230,
          "agent_type": 8230,
          "has_affinity": 8230,
          "original_subject": 8230,
          "original_object": 8230
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 7699,
          "CHEBI": 355,
          "UNII": 176
        },
        "object_id_prefixes": {
          "UniProtKB": 8230
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 1410,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1410
        },
        "qualifiers": {},
        "attributes": {
          "id": 1410,
          "category": 1410,
          "publications": 1410,
          "knowledge_level": 1410,
          "agent_type": 1410,
          "has_affinity": 1410,
          "original_subject": 1410,
          "original_object": 1410
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 1362,
          "UNII": 26,
          "CHEBI": 22
        },
        "object_id_prefixes": {
          "NCBIGene": 1410
        }
      },
      {
        "subject_category": [
          "biolink:Drug",
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 6788,
        "primary_knowledge_sources": {
          "infores:bindingdb": 6788
        },
        "qualifiers": {},
        "attributes": {
          "id": 6788,
          "category": 6788,
          "publications": 6788,
          "knowledge_level": 6788,
          "agent_type": 6788,
          "has_affinity": 6788,
          "original_subject": 6788,
          "original_object": 6788
        },
        "subject_id_prefixes": {
          "CHEBI": 6575,
          "UNII": 177,
          "PUBCHEM.COMPOUND": 36
        },
        "object_id_prefixes": {
          "NCBIGene": 6788
        }
      },
      {
        "subject_category": [
          "biolink:Drug",
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 213,
        "primary_knowledge_sources": {
          "infores:bindingdb": 213
        },
        "qualifiers": {},
        "attributes": {
          "id": 213,
          "category": 213,
          "publications": 213,
          "knowledge_level": 213,
          "agent_type": 213,
          "has_affinity": 213,
          "original_subject": 213,
          "original_object": 213
        },
        "subject_id_prefixes": {
          "CHEBI": 208,
          "UNII": 3,
          "PUBCHEM.COMPOUND": 2
        },
        "object_id_prefixes": {
          "UniProtKB": 213
        }
      },
      {
        "subject_category": [
          "biolink:ChemicalEntity"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 194,
        "primary_knowledge_sources": {
          "infores:bindingdb": 194
        },
        "qualifiers": {},
        "attributes": {
          "id": 194,
          "category": 194,
          "publications": 194,
          "knowledge_level": 194,
          "agent_type": 194,
          "has_affinity": 194,
          "original_subject": 194,
          "original_object": 194
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 194
        },
        "object_id_prefixes": {
          "NCBIGene": 194
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture",
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Gene",
          "biolink:Protein"
        ],
        "count": 35,
        "primary_knowledge_sources": {
          "infores:bindingdb": 35
        },
        "qualifiers": {},
        "attributes": {
          "id": 35,
          "category": 35,
          "publications": 35,
          "knowledge_level": 35,
          "agent_type": 35,
          "has_affinity": 35,
          "original_subject": 35,
          "original_object": 35
        },
        "subject_id_prefixes": {
          "CHEBI": 30,
          "UNII": 5
        },
        "object_id_prefixes": {
          "NCBIGene": 35
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 8,
        "primary_knowledge_sources": {
          "infores:bindingdb": 8
        },
        "qualifiers": {},
        "attributes": {
          "id": 8,
          "category": 8,
          "publications": 8,
          "knowledge_level": 8,
          "agent_type": 8,
          "has_affinity": 8,
          "original_subject": 8,
          "original_object": 8
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 8
        },
        "object_id_prefixes": {
          "UniProtKB": 8
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture",
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 1,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1
        },
        "qualifiers": {},
        "attributes": {
          "id": 1,
          "category": 1,
          "publications": 1,
          "knowledge_level": 1,
          "agent_type": 1,
          "has_affinity": 1,
          "original_subject": 1,
          "original_object": 1
        },
        "subject_id_prefixes": {
          "CHEBI": 1
        },
        "object_id_prefixes": {
          "UniProtKB": 1
        }
      }
    ],
    "edges_summary": {
      "total_count": 1099287,
      "predicates": {
        "biolink:directly_physically_interacts_with": 1099287
      },
      "primary_knowledge_sources": {
        "infores:bindingdb": 1099287
      },
      "predicates_by_knowledge_source": {
        "infores:bindingdb": {
          "biolink:directly_physically_interacts_with": 1099287
        }
      },
      "qualifiers": {},
      "attributes": {
        "id": 1099287,
        "category": 1099287,
        "publications": 1099287,
        "knowledge_level": 1099287,
        "agent_type": 1099287,
        "has_affinity": 1099287,
        "original_subject": 1099287,
        "original_object": 1099287
      }
    }
  },
  "biolinkVersion": "4.3.7",
  "babelVersion": "2025sep1",
  "distribution": [],
  "hasPart": [],
  "isBasedOn": [
    {
      "@type": "Dataset",
      "identifier": "bindingdb",
      "name": "BindingDb",
      "description": "The Binding Database (\"BindingDb\") is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules. As of July 31, 2021, BindingDB contains thousands of dataset Entries, each with a DOI, containing millions of binding assay results for thousands of protein targets assayed against over a million distinct small molecule ligands.",
      "license": {
        "terms_of_use_description": "All data and download files in bindingDB are freely available under a 'Creative Commons BY 3.0' license."
      },
      "url": [
        "BindingDb bulk downloads - https://www.bindingdb.org/rwd/bind/downloads/"
      ],
      "version": "202605"
    }
  ]
}