{
  "@context": {
    "@vocab": "https://schema.org/",
    "biolink": "https://w3id.org/biolink/",
    "orion": "https://github.com/RobokopU24/ORION"
  },
  "@id": "https://kgx-storage.ci.transltr.io/releases/bindingdb/2026_07_05/",
  "@type": "Dataset",
  "name": "bindingdb",
  "description": "A knowledge graph built for the NCATS Biomedical Data Translator project using Translator-Ingests, Biolink Model, and Node Normalizer.",
  "license": "MIT",
  "url": "https://kgx-storage.ci.transltr.io/releases/bindingdb/2026_07_05/",
  "version": "bindingdb_202607_4490a80b_2025sep1_2.4.1_1.4.0_conflated_strict_2.0.0_4.4.2",
  "dateCreated": "2026_07_05",
  "dateModified": "",
  "keywords": [],
  "creator": [],
  "contactPoint": [],
  "funder": [],
  "conformsTo": [],
  "schema": {
    "nodes": [
      {
        "category": [
          "biolink:SmallMolecule"
        ],
        "count": 803442,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 795962,
          "CHEBI": 4123,
          "UNII": 3357
        },
        "attributes": {
          "name": 803442,
          "equivalent_identifiers": 803442,
          "information_content": 4122,
          "description": 1731
        }
      },
      {
        "category": [
          "biolink:Drug",
          "biolink:SmallMolecule"
        ],
        "count": 1001,
        "id_prefixes": {
          "CHEBI": 922,
          "UNII": 73,
          "PUBCHEM.COMPOUND": 6
        },
        "attributes": {
          "name": 1001,
          "equivalent_identifiers": 1001,
          "information_content": 917,
          "description": 723
        }
      },
      {
        "category": [
          "biolink:MolecularMixture",
          "biolink:SmallMolecule"
        ],
        "count": 14,
        "id_prefixes": {
          "CHEBI": 11,
          "UNII": 3
        },
        "attributes": {
          "name": 14,
          "equivalent_identifiers": 14,
          "information_content": 11,
          "description": 7
        }
      },
      {
        "category": [
          "biolink:MolecularMixture"
        ],
        "count": 1031,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 1005,
          "UNII": 16,
          "CHEBI": 10
        },
        "attributes": {
          "name": 1031,
          "equivalent_identifiers": 1031,
          "information_content": 10,
          "description": 5
        }
      },
      {
        "category": [
          "biolink:Protein",
          "biolink:Gene"
        ],
        "count": 3983,
        "id_prefixes": {
          "NCBIGene": 3983
        },
        "attributes": {
          "name": 3983,
          "in_taxon": 3983,
          "in_taxon_label": 3983,
          "equivalent_identifiers": 3983,
          "description": 3983,
          "information_content": 3913
        }
      },
      {
        "category": [
          "biolink:ChemicalEntity"
        ],
        "count": 192,
        "id_prefixes": {
          "PUBCHEM.COMPOUND": 192
        },
        "attributes": {
          "name": 192,
          "equivalent_identifiers": 192
        }
      },
      {
        "category": [
          "biolink:Protein"
        ],
        "count": 150,
        "id_prefixes": {
          "UniProtKB": 150
        },
        "attributes": {
          "name": 150,
          "in_taxon": 150,
          "in_taxon_label": 150,
          "equivalent_identifiers": 150,
          "information_content": 107,
          "description": 107
        }
      }
    ],
    "nodes_summary": {
      "total_count": 809813,
      "id_prefixes": {
        "PUBCHEM.COMPOUND": 797165,
        "CHEBI": 5066,
        "NCBIGene": 3983,
        "UNII": 3449,
        "UniProtKB": 150
      },
      "attributes": {
        "name": 809813,
        "equivalent_identifiers": 809813,
        "information_content": 9080,
        "description": 6556,
        "in_taxon": 4133,
        "in_taxon_label": 4133
      }
    },
    "edges": [
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein",
          "biolink:Gene"
        ],
        "count": 1128229,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1128229
        },
        "qualifiers": {},
        "attributes": {
          "id": 1128229,
          "category": 1128229,
          "publications": 1128229,
          "knowledge_level": 1128229,
          "agent_type": 1128229,
          "has_affinity": 1128229,
          "original_subject": 1128229,
          "original_object": 1128229
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 1104282,
          "CHEBI": 14885,
          "UNII": 9062
        },
        "object_id_prefixes": {
          "NCBIGene": 1128229
        }
      },
      {
        "subject_category": [
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 8271,
        "primary_knowledge_sources": {
          "infores:bindingdb": 8271
        },
        "qualifiers": {},
        "attributes": {
          "id": 8271,
          "category": 8271,
          "publications": 8271,
          "knowledge_level": 8271,
          "agent_type": 8271,
          "has_affinity": 8271,
          "original_subject": 8271,
          "original_object": 8271
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 7740,
          "CHEBI": 355,
          "UNII": 176
        },
        "object_id_prefixes": {
          "UniProtKB": 8271
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein",
          "biolink:Gene"
        ],
        "count": 1404,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1404
        },
        "qualifiers": {},
        "attributes": {
          "id": 1404,
          "category": 1404,
          "publications": 1404,
          "knowledge_level": 1404,
          "agent_type": 1404,
          "has_affinity": 1404,
          "original_subject": 1404,
          "original_object": 1404
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 1360,
          "CHEBI": 22,
          "UNII": 22
        },
        "object_id_prefixes": {
          "NCBIGene": 1404
        }
      },
      {
        "subject_category": [
          "biolink:Drug",
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein",
          "biolink:Gene"
        ],
        "count": 6851,
        "primary_knowledge_sources": {
          "infores:bindingdb": 6851
        },
        "qualifiers": {},
        "attributes": {
          "id": 6851,
          "category": 6851,
          "publications": 6851,
          "knowledge_level": 6851,
          "agent_type": 6851,
          "has_affinity": 6851,
          "original_subject": 6851,
          "original_object": 6851
        },
        "subject_id_prefixes": {
          "CHEBI": 6631,
          "UNII": 184,
          "PUBCHEM.COMPOUND": 36
        },
        "object_id_prefixes": {
          "NCBIGene": 6851
        }
      },
      {
        "subject_category": [
          "biolink:Drug",
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 215,
        "primary_knowledge_sources": {
          "infores:bindingdb": 215
        },
        "qualifiers": {},
        "attributes": {
          "id": 215,
          "category": 215,
          "publications": 215,
          "knowledge_level": 215,
          "agent_type": 215,
          "has_affinity": 215,
          "original_subject": 215,
          "original_object": 215
        },
        "subject_id_prefixes": {
          "CHEBI": 210,
          "UNII": 3,
          "PUBCHEM.COMPOUND": 2
        },
        "object_id_prefixes": {
          "UniProtKB": 215
        }
      },
      {
        "subject_category": [
          "biolink:ChemicalEntity"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein",
          "biolink:Gene"
        ],
        "count": 234,
        "primary_knowledge_sources": {
          "infores:bindingdb": 234
        },
        "qualifiers": {},
        "attributes": {
          "id": 234,
          "category": 234,
          "publications": 234,
          "knowledge_level": 234,
          "agent_type": 234,
          "has_affinity": 234,
          "original_subject": 234,
          "original_object": 234
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 234
        },
        "object_id_prefixes": {
          "NCBIGene": 234
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture",
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein",
          "biolink:Gene"
        ],
        "count": 36,
        "primary_knowledge_sources": {
          "infores:bindingdb": 36
        },
        "qualifiers": {},
        "attributes": {
          "id": 36,
          "category": 36,
          "publications": 36,
          "knowledge_level": 36,
          "agent_type": 36,
          "has_affinity": 36,
          "original_subject": 36,
          "original_object": 36
        },
        "subject_id_prefixes": {
          "CHEBI": 31,
          "UNII": 5
        },
        "object_id_prefixes": {
          "NCBIGene": 36
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 8,
        "primary_knowledge_sources": {
          "infores:bindingdb": 8
        },
        "qualifiers": {},
        "attributes": {
          "id": 8,
          "category": 8,
          "publications": 8,
          "knowledge_level": 8,
          "agent_type": 8,
          "has_affinity": 8,
          "original_subject": 8,
          "original_object": 8
        },
        "subject_id_prefixes": {
          "PUBCHEM.COMPOUND": 8
        },
        "object_id_prefixes": {
          "UniProtKB": 8
        }
      },
      {
        "subject_category": [
          "biolink:MolecularMixture",
          "biolink:SmallMolecule"
        ],
        "predicate": "biolink:directly_physically_interacts_with",
        "object_category": [
          "biolink:Protein"
        ],
        "count": 1,
        "primary_knowledge_sources": {
          "infores:bindingdb": 1
        },
        "qualifiers": {},
        "attributes": {
          "id": 1,
          "category": 1,
          "publications": 1,
          "knowledge_level": 1,
          "agent_type": 1,
          "has_affinity": 1,
          "original_subject": 1,
          "original_object": 1
        },
        "subject_id_prefixes": {
          "CHEBI": 1
        },
        "object_id_prefixes": {
          "UniProtKB": 1
        }
      }
    ],
    "edges_summary": {
      "total_count": 1145249,
      "predicates": {
        "biolink:directly_physically_interacts_with": 1145249
      },
      "primary_knowledge_sources": {
        "infores:bindingdb": 1145249
      },
      "predicates_by_knowledge_source": {
        "infores:bindingdb": {
          "biolink:directly_physically_interacts_with": 1145249
        }
      },
      "qualifiers": {},
      "attributes": {
        "id": 1145249,
        "category": 1145249,
        "publications": 1145249,
        "knowledge_level": 1145249,
        "agent_type": 1145249,
        "has_affinity": 1145249,
        "original_subject": 1145249,
        "original_object": 1145249
      }
    }
  },
  "biolinkVersion": "4.4.2",
  "babelVersion": "2025sep1",
  "distribution": [],
  "hasPart": [],
  "isBasedOn": [
    {
      "@type": "Dataset",
      "identifier": "bindingdb",
      "name": "BindingDb",
      "description": "The Binding Database (\"BindingDb\") is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules. As of July 31, 2021, BindingDB contains thousands of dataset Entries, each with a DOI, containing millions of binding assay results for thousands of protein targets assayed against over a million distinct small molecule ligands.",
      "license": {
        "terms_of_use_description": "All data and download files in bindingDB are freely available under a 'Creative Commons BY 3.0' license."
      },
      "url": [
        "BindingDb bulk downloads - https://www.bindingdb.org/rwd/bind/downloads/"
      ],
      "version": "202607"
    }
  ]
}