{ "@context": { "@vocab": "https://schema.org/", "biolink": "https://w3id.org/biolink/", "orion": "https://github.com/RobokopU24/ORION" }, "@id": "https://kgx-storage.ci.transltr.io/releases/ubergraph/2026_06_09/", "@type": "Dataset", "name": "ubergraph", "description": "A knowledge graph built for the NCATS Biomedical Data Translator project using Translator-Ingests, Biolink Model, and Node Normalizer.", "license": "MIT", "url": "https://kgx-storage.ci.transltr.io/releases/ubergraph/2026_06_09/", "version": "ubergraph_2026-05-31_e7f773ea_2025sep1_2.4.1_1.4.0_conflated_strict_2.0.0_4.4.2", "dateCreated": "2026_06_09", "dateModified": "", "keywords": [], "creator": [], "contactPoint": [], "funder": [], "conformsTo": [], "schema": { "nodes": [ { "category": [ "biolink:SmallMolecule" ], "count": 183035, "id_prefixes": { "CHEBI": 183031, "PUBCHEM.COMPOUND": 3, "UNII": 1 }, "attributes": { "name": 183035, "equivalent_identifiers": 183035, "information_content": 183035, "description": 43732 } }, { "category": [ "biolink:MolecularMixture" ], "count": 3091, "id_prefixes": { "CHEBI": 3090, "UNII": 1 }, "attributes": { "name": 3091, "equivalent_identifiers": 3091, "information_content": 3091, "description": 1567 } }, { "category": [ "biolink:SmallMolecule", "biolink:Drug" ], "count": 1838, "id_prefixes": { "CHEBI": 1826, "UNII": 7, "PUBCHEM.COMPOUND": 5 }, "attributes": { "name": 1838, "equivalent_identifiers": 1838, "information_content": 1838, "description": 1392 } }, { "category": [ "biolink:ChemicalMixture" ], "count": 504, "id_prefixes": { "CHEBI": 504 }, "attributes": { "name": 504, "equivalent_identifiers": 504, "information_content": 504, "description": 376 } }, { "category": [ "biolink:ChemicalEntity" ], "count": 11040, "id_prefixes": { "CHEBI": 11040 }, "attributes": { "name": 11040, "equivalent_identifiers": 11040, "information_content": 11039, "description": 5290 } }, { "category": [ "biolink:Drug" ], "count": 160, "id_prefixes": { "CHEBI": 152, "PUBCHEM.COMPOUND": 5, "UNII": 2, "CHEMBL.COMPOUND": 1 }, "attributes": { "name": 160, "equivalent_identifiers": 160, "information_content": 160, "description": 104 } }, { "category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "count": 75, "id_prefixes": { "CHEBI": 70, "UNII": 4, "PUBCHEM.COMPOUND": 1 }, "attributes": { "name": 75, "equivalent_identifiers": 75, "information_content": 75, "description": 47 } }, { "category": [ "biolink:Cell" ], "count": 5333, "id_prefixes": { "CL": 3039, "UMLS": 2291, "NCIT": 3 }, "attributes": { "name": 5333, "equivalent_identifiers": 5333, "information_content": 5287, "description": 4271 } }, { "category": [ "biolink:Disease" ], "count": 43400, "id_prefixes": { "MONDO": 26250, "UMLS": 16741, "NCIT": 200, "EFO": 146, "DOID": 35, "OMIM": 28 }, "attributes": { "name": 43400, "equivalent_identifiers": 43400, "information_content": 43400, "description": 35291 } }, { "category": [ "biolink:PhenotypicFeature" ], "count": 36352, "id_prefixes": { "NCIT": 19751, "HP": 16447, "EFO": 154 }, "attributes": { "name": 36352, "equivalent_identifiers": 36352, "information_content": 36352, "description": 28432 } }, { "category": [ "biolink:BiologicalProcess" ], "count": 23506, "id_prefixes": { "GO": 23506 }, "attributes": { "name": 23506, "equivalent_identifiers": 23506, "information_content": 23506, "description": 23506 } }, { "category": [ "biolink:MolecularActivity" ], "count": 9964, "id_prefixes": { "GO": 9964 }, "attributes": { "name": 9964, "equivalent_identifiers": 9964, "information_content": 9964, "description": 9964 } }, { "category": [ "biolink:CellularComponent" ], "count": 5379, "id_prefixes": { "GO": 4036, "UMLS": 1163, "NCIT": 122, "MESH": 58 }, "attributes": { "name": 5379, "equivalent_identifiers": 5379, "information_content": 5379, "description": 5369 } }, { "category": [ "biolink:Pathway" ], "count": 542, "id_prefixes": { "GO": 542 }, "attributes": { "name": 542, "equivalent_identifiers": 542, "information_content": 542, "description": 542 } }, { "category": [ "biolink:Gene", "biolink:Protein" ], "count": 91388, "id_prefixes": { "NCBIGene": 91388 }, "attributes": { "name": 91388, "equivalent_identifiers": 91388, "information_content": 91388, "description": 91388 } }, { "category": [ "biolink:OrganismTaxon" ], "count": 2685237, "id_prefixes": { "NCBITaxon": 2685237 }, "attributes": { "name": 2685237, "equivalent_identifiers": 2685237, "information_content": 2643769 } }, { "category": [ "biolink:AnatomicalEntity" ], "count": 7556, "id_prefixes": { "UBERON": 4082, "UMLS": 2003, "NCIT": 1471 }, "attributes": { "name": 7556, "equivalent_identifiers": 7556, "information_content": 7540, "description": 6275 } }, { "category": [ "biolink:Protein" ], "count": 161571, "id_prefixes": { "UniProtKB": 82171, "PR": 79400 }, "attributes": { "name": 161571, "equivalent_identifiers": 161571, "information_content": 161571, "description": 161530 } }, { "category": [ "biolink:GrossAnatomicalStructure" ], "count": 10471, "id_prefixes": { "UBERON": 10471 }, "attributes": { "name": 10471, "equivalent_identifiers": 10471, "information_content": 10471, "description": 8851 } } ], "nodes_summary": { "total_count": 3280442, "id_prefixes": { "NCBITaxon": 2685237, "CHEBI": 199713, "NCBIGene": 91388, "UniProtKB": 82171, "PR": 79400, "GO": 38048, "MONDO": 26250, "UMLS": 22198, "NCIT": 21547, "HP": 16447, "UBERON": 14553, "CL": 3039, "EFO": 300, "MESH": 58, "DOID": 35, "OMIM": 28, "UNII": 15, "PUBCHEM.COMPOUND": 14, "CHEMBL.COMPOUND": 1 }, "attributes": { "name": 3280442, "equivalent_identifiers": 3280442, "information_content": 3238911, "description": 427927 } }, "edges": [ { "subject_category": [ "biolink:OrganismTaxon" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:OrganismTaxon" ], "count": 48743096, "primary_knowledge_sources": { "infores:ubergraph": 48743096 }, "qualifiers": {}, "attributes": { "id": 48743096, "category": 48743096, "knowledge_level": 48743096, "agent_type": 48743096, "original_subject": 48743096, "original_object": 48743096 }, "subject_id_prefixes": { "NCBITaxon": 48743096 }, "object_id_prefixes": { "NCBITaxon": 48743096 } }, { "subject_category": [ "biolink:OrganismTaxon" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:AnatomicalEntity" ], "count": 5370474, "primary_knowledge_sources": { "infores:ubergraph": 5370474 }, "qualifiers": {}, "attributes": { "id": 5370474, "category": 5370474, "knowledge_level": 5370474, "agent_type": 5370474, "original_subject": 5370474, "original_object": 5370474 }, "subject_id_prefixes": { "NCBITaxon": 5370474 }, "object_id_prefixes": { "UBERON": 5370474 } }, { "subject_category": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 4183054, "primary_knowledge_sources": { "infores:ubergraph": 4183054 }, "qualifiers": {}, "attributes": { "id": 4183054, "category": 4183054, "knowledge_level": 4183054, "agent_type": 4183054, "original_subject": 4183054, "original_object": 4183054 }, "subject_id_prefixes": { "CHEBI": 4182930, "PUBCHEM.COMPOUND": 77, "UNII": 47 }, "object_id_prefixes": { "CHEBI": 4183054 } }, { "subject_category": [ "biolink:PhenotypicFeature" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:PhenotypicFeature" ], "count": 288088, "primary_knowledge_sources": { "infores:ubergraph": 288088 }, "qualifiers": {}, "attributes": { "id": 288088, "category": 288088, "knowledge_level": 288088, "agent_type": 288088, "original_subject": 288088, "original_object": 288088 }, "subject_id_prefixes": { "HP": 170874, "NCIT": 116900, "EFO": 314 }, "object_id_prefixes": { "HP": 168436, "NCIT": 97717, "EFO": 21935 } }, { "subject_category": [ "biolink:BiologicalProcess" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:BiologicalProcess" ], "count": 265109, "primary_knowledge_sources": { "infores:ubergraph": 265109 }, "qualifiers": {}, "attributes": { "id": 265109, "category": 265109, "knowledge_level": 265109, "agent_type": 265109, "original_subject": 265109, "original_object": 265109 }, "subject_id_prefixes": { "GO": 265109 }, "object_id_prefixes": { "GO": 265109 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 1005268, "primary_knowledge_sources": { "infores:ubergraph": 1005268 }, "qualifiers": {}, "attributes": { "id": 1005268, "category": 1005268, "knowledge_level": 1005268, "agent_type": 1005268, "original_subject": 1005268, "original_object": 1005268 }, "subject_id_prefixes": { "NCBIGene": 1005268 }, "object_id_prefixes": { "CHEBI": 1005268 } }, { "subject_category": [ "biolink:Protein" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 1777281, "primary_knowledge_sources": { "infores:ubergraph": 1777281 }, "qualifiers": {}, "attributes": { "id": 1777281, "category": 1777281, "knowledge_level": 1777281, "agent_type": 1777281, "original_subject": 1777281, "original_object": 1777281 }, "subject_id_prefixes": { "UniProtKB": 903881, "PR": 873400 }, "object_id_prefixes": { "CHEBI": 1777281 } }, { "subject_category": [ "biolink:Protein" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Gene", "biolink:Protein" ], "count": 108389, "primary_knowledge_sources": { "infores:ubergraph": 108389 }, "qualifiers": {}, "attributes": { "id": 108389, "category": 108389, "knowledge_level": 108389, "agent_type": 108389, "original_subject": 108389, "original_object": 108389 }, "subject_id_prefixes": { "UniProtKB": 68687, "PR": 39702 }, "object_id_prefixes": { "NCBIGene": 108389 } }, { "subject_category": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Disease" ], "count": 594928, "primary_knowledge_sources": { "infores:ubergraph": 594928 }, "qualifiers": {}, "attributes": { "id": 594928, "category": 594928, "knowledge_level": 594928, "agent_type": 594928, "original_subject": 594928, "original_object": 594928 }, "subject_id_prefixes": { "MONDO": 336563, "UMLS": 250688, "NCIT": 5355, "EFO": 1817, "DOID": 292, "OMIM": 213 }, "object_id_prefixes": { "MONDO": 460104, "UMLS": 131021, "EFO": 2850, "NCIT": 926, "DOID": 27 } }, { "subject_category": [ "biolink:Protein" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Protein" ], "count": 608586, "primary_knowledge_sources": { "infores:ubergraph": 608586 }, "qualifiers": {}, "attributes": { "id": 608586, "category": 608586, "knowledge_level": 608586, "agent_type": 608586, "original_subject": 608586, "original_object": 608586 }, "subject_id_prefixes": { "UniProtKB": 348339, "PR": 260247 }, "object_id_prefixes": { "PR": 604251, "UniProtKB": 4335 } }, { "subject_category": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 238097, "primary_knowledge_sources": { "infores:ubergraph": 238097 }, "qualifiers": {}, "attributes": { "id": 238097, "category": 238097, "knowledge_level": 238097, "agent_type": 238097, "original_subject": 238097, "original_object": 238097 }, "subject_id_prefixes": { "CHEBI": 238097 }, "object_id_prefixes": { "CHEBI": 238097 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Protein" ], "count": 340779, "primary_knowledge_sources": { "infores:ubergraph": 340779 }, "qualifiers": {}, "attributes": { "id": 340779, "category": 340779, "knowledge_level": 340779, "agent_type": 340779, "original_subject": 340779, "original_object": 340779 }, "subject_id_prefixes": { "NCBIGene": 340779 }, "object_id_prefixes": { "PR": 340762, "UniProtKB": 17 } }, { "subject_category": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule" ], "count": 187795, "primary_knowledge_sources": { "infores:ubergraph": 187795 }, "qualifiers": {}, "attributes": { "id": 187795, "category": 187795, "knowledge_level": 187795, "agent_type": 187795, "original_subject": 187795, "original_object": 187795 }, "subject_id_prefixes": { "CHEBI": 187789, "UNII": 5, "PUBCHEM.COMPOUND": 1 }, "object_id_prefixes": { "CHEBI": 187795 } }, { "subject_category": [ "biolink:MolecularActivity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:MolecularActivity" ], "count": 63091, "primary_knowledge_sources": { "infores:ubergraph": 63091 }, "qualifiers": {}, "attributes": { "id": 63091, "category": 63091, "knowledge_level": 63091, "agent_type": 63091, "original_subject": 63091, "original_object": 63091 }, "subject_id_prefixes": { "GO": 63091 }, "object_id_prefixes": { "GO": 63091 } }, { "subject_category": [ "biolink:Pathway" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Pathway" ], "count": 2286, "primary_knowledge_sources": { "infores:ubergraph": 2286 }, "qualifiers": {}, "attributes": { "id": 2286, "category": 2286, "knowledge_level": 2286, "agent_type": 2286, "original_subject": 2286, "original_object": 2286 }, "subject_id_prefixes": { "GO": 2286 }, "object_id_prefixes": { "GO": 2286 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 61075, "primary_knowledge_sources": { "infores:ubergraph": 61075 }, "qualifiers": {}, "attributes": { "id": 61075, "category": 61075, "knowledge_level": 61075, "agent_type": 61075, "original_subject": 61075, "original_object": 61075 }, "subject_id_prefixes": { "CHEBI": 60745, "PUBCHEM.COMPOUND": 181, "UNII": 149 }, "object_id_prefixes": { "CHEBI": 61075 } }, { "subject_category": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 49128, "primary_knowledge_sources": { "infores:ubergraph": 49128 }, "qualifiers": {}, "attributes": { "id": 49128, "category": 49128, "knowledge_level": 49128, "agent_type": 49128, "original_subject": 49128, "original_object": 49128 }, "subject_id_prefixes": { "CHEBI": 49122, "UNII": 6 }, "object_id_prefixes": { "CHEBI": 49128 } }, { "subject_category": [ "biolink:Cell" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Cell" ], "count": 43700, "primary_knowledge_sources": { "infores:ubergraph": 43700 }, "qualifiers": {}, "attributes": { "id": 43700, "category": 43700, "knowledge_level": 43700, "agent_type": 43700, "original_subject": 43700, "original_object": 43700 }, "subject_id_prefixes": { "CL": 31494, "UMLS": 12197, "NCIT": 9 }, "object_id_prefixes": { "CL": 32371, "UMLS": 11325, "NCIT": 4 } }, { "subject_category": [ "biolink:GrossAnatomicalStructure" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:GrossAnatomicalStructure" ], "count": 73198, "primary_knowledge_sources": { "infores:ubergraph": 73198 }, "qualifiers": {}, "attributes": { "id": 73198, "category": 73198, "knowledge_level": 73198, "agent_type": 73198, "original_subject": 73198, "original_object": 73198 }, "subject_id_prefixes": { "UBERON": 73198 }, "object_id_prefixes": { "UBERON": 73198 } }, { "subject_category": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:PhenotypicFeature" ], "count": 38274, "primary_knowledge_sources": { "infores:ubergraph": 38274 }, "qualifiers": {}, "attributes": { "id": 38274, "category": 38274, "knowledge_level": 38274, "agent_type": 38274, "original_subject": 38274, "original_object": 38274 }, "subject_id_prefixes": { "MONDO": 20313, "UMLS": 17733, "EFO": 196, "DOID": 15, "OMIM": 11, "NCIT": 6 }, "object_id_prefixes": { "HP": 18568, "NCIT": 13796, "EFO": 5910 } }, { "subject_category": [ "biolink:AnatomicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:GrossAnatomicalStructure" ], "count": 4041, "primary_knowledge_sources": { "infores:ubergraph": 4041 }, "qualifiers": {}, "attributes": { "id": 4041, "category": 4041, "knowledge_level": 4041, "agent_type": 4041, "original_subject": 4041, "original_object": 4041 }, "subject_id_prefixes": { "UMLS": 3077, "UBERON": 885, "NCIT": 79 }, "object_id_prefixes": { "UBERON": 4041 } }, { "subject_category": [ "biolink:PhenotypicFeature" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Disease" ], "count": 32666, "primary_knowledge_sources": { "infores:ubergraph": 32666 }, "qualifiers": {}, "attributes": { "id": 32666, "category": 32666, "knowledge_level": 32666, "agent_type": 32666, "original_subject": 32666, "original_object": 32666 }, "subject_id_prefixes": { "HP": 22526, "NCIT": 10098, "EFO": 42 }, "object_id_prefixes": { "MONDO": 20837, "EFO": 9227, "UMLS": 2602 } }, { "subject_category": [ "biolink:CellularComponent" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:CellularComponent" ], "count": 27196, "primary_knowledge_sources": { "infores:ubergraph": 27196 }, "qualifiers": {}, "attributes": { "id": 27196, "category": 27196, "knowledge_level": 27196, "agent_type": 27196, "original_subject": 27196, "original_object": 27196 }, "subject_id_prefixes": { "GO": 19801, "UMLS": 6495, "NCIT": 770, "MESH": 130 }, "object_id_prefixes": { "GO": 19611, "UMLS": 4962, "MESH": 2484, "NCIT": 139 } }, { "subject_category": [ "biolink:AnatomicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:AnatomicalEntity" ], "count": 38437, "primary_knowledge_sources": { "infores:ubergraph": 38437 }, "qualifiers": {}, "attributes": { "id": 38437, "category": 38437, "knowledge_level": 38437, "agent_type": 38437, "original_subject": 38437, "original_object": 38437 }, "subject_id_prefixes": { "UBERON": 26710, "NCIT": 7217, "UMLS": 4510 }, "object_id_prefixes": { "UBERON": 29351, "UMLS": 4812, "NCIT": 4274 } }, { "subject_category": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule" ], "count": 9890, "primary_knowledge_sources": { "infores:ubergraph": 9890 }, "qualifiers": {}, "attributes": { "id": 9890, "category": 9890, "knowledge_level": 9890, "agent_type": 9890, "original_subject": 9890, "original_object": 9890 }, "subject_id_prefixes": { "CHEBI": 9890 }, "object_id_prefixes": { "CHEBI": 9890 } }, { "subject_category": [ "biolink:GrossAnatomicalStructure" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:AnatomicalEntity" ], "count": 37588, "primary_knowledge_sources": { "infores:ubergraph": 37588 }, "qualifiers": {}, "attributes": { "id": 37588, "category": 37588, "knowledge_level": 37588, "agent_type": 37588, "original_subject": 37588, "original_object": 37588 }, "subject_id_prefixes": { "UBERON": 37588 }, "object_id_prefixes": { "UBERON": 35233, "UMLS": 2353, "NCIT": 2 } }, { "subject_category": [ "biolink:Pathway" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:BiologicalProcess" ], "count": 4932, "primary_knowledge_sources": { "infores:ubergraph": 4932 }, "qualifiers": {}, "attributes": { "id": 4932, "category": 4932, "knowledge_level": 4932, "agent_type": 4932, "original_subject": 4932, "original_object": 4932 }, "subject_id_prefixes": { "GO": 4932 }, "object_id_prefixes": { "GO": 4932 } }, { "subject_category": [ "biolink:CellularComponent" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:AnatomicalEntity" ], "count": 7309, "primary_knowledge_sources": { "infores:ubergraph": 7309 }, "qualifiers": {}, "attributes": { "id": 7309, "category": 7309, "knowledge_level": 7309, "agent_type": 7309, "original_subject": 7309, "original_object": 7309 }, "subject_id_prefixes": { "GO": 5818, "UMLS": 1222, "MESH": 147, "NCIT": 122 }, "object_id_prefixes": { "UBERON": 7123, "UMLS": 101, "NCIT": 85 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule" ], "count": 3776, "primary_knowledge_sources": { "infores:ubergraph": 3776 }, "qualifiers": {}, "attributes": { "id": 3776, "category": 3776, "knowledge_level": 3776, "agent_type": 3776, "original_subject": 3776, "original_object": 3776 }, "subject_id_prefixes": { "CHEBI": 3763, "PUBCHEM.COMPOUND": 8, "UNII": 5 }, "object_id_prefixes": { "CHEBI": 3776 } }, { "subject_category": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalMixture" ], "count": 382, "primary_knowledge_sources": { "infores:ubergraph": 382 }, "qualifiers": {}, "attributes": { "id": 382, "category": 382, "knowledge_level": 382, "agent_type": 382, "original_subject": 382, "original_object": 382 }, "subject_id_prefixes": { "CHEBI": 382 }, "object_id_prefixes": { "CHEBI": 382 } }, { "subject_category": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:MolecularMixture" ], "count": 1248, "primary_knowledge_sources": { "infores:ubergraph": 1248 }, "qualifiers": {}, "attributes": { "id": 1248, "category": 1248, "knowledge_level": 1248, "agent_type": 1248, "original_subject": 1248, "original_object": 1248 }, "subject_id_prefixes": { "CHEBI": 1248 }, "object_id_prefixes": { "CHEBI": 1248 } }, { "subject_category": [ "biolink:Cell" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:AnatomicalEntity" ], "count": 10187, "primary_knowledge_sources": { "infores:ubergraph": 10187 }, "qualifiers": {}, "attributes": { "id": 10187, "category": 10187, "knowledge_level": 10187, "agent_type": 10187, "original_subject": 10187, "original_object": 10187 }, "subject_id_prefixes": { "CL": 9362, "UMLS": 817, "NCIT": 8 }, "object_id_prefixes": { "UBERON": 9511, "UMLS": 676 } }, { "subject_category": [ "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 2984, "primary_knowledge_sources": { "infores:ubergraph": 2984 }, "qualifiers": {}, "attributes": { "id": 2984, "category": 2984, "knowledge_level": 2984, "agent_type": 2984, "original_subject": 2984, "original_object": 2984 }, "subject_id_prefixes": { "CHEBI": 2799, "PUBCHEM.COMPOUND": 152, "UNII": 27, "CHEMBL.COMPOUND": 6 }, "object_id_prefixes": { "CHEBI": 2984 } }, { "subject_category": [ "biolink:ChemicalMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalMixture" ], "count": 1364, "primary_knowledge_sources": { "infores:ubergraph": 1364 }, "qualifiers": {}, "attributes": { "id": 1364, "category": 1364, "knowledge_level": 1364, "agent_type": 1364, "original_subject": 1364, "original_object": 1364 }, "subject_id_prefixes": { "CHEBI": 1364 }, "object_id_prefixes": { "CHEBI": 1364 } }, { "subject_category": [ "biolink:CellularComponent" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:GrossAnatomicalStructure" ], "count": 1413, "primary_knowledge_sources": { "infores:ubergraph": 1413 }, "qualifiers": {}, "attributes": { "id": 1413, "category": 1413, "knowledge_level": 1413, "agent_type": 1413, "original_subject": 1413, "original_object": 1413 }, "subject_id_prefixes": { "UMLS": 1158, "NCIT": 122, "GO": 101, "MESH": 32 }, "object_id_prefixes": { "UBERON": 1413 } }, { "subject_category": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "count": 2325, "primary_knowledge_sources": { "infores:ubergraph": 2325 }, "qualifiers": {}, "attributes": { "id": 2325, "category": 2325, "knowledge_level": 2325, "agent_type": 2325, "original_subject": 2325, "original_object": 2325 }, "subject_id_prefixes": { "CHEBI": 2325 }, "object_id_prefixes": { "CHEBI": 2318, "PUBCHEM.COMPOUND": 7 } }, { "subject_category": [ "biolink:ChemicalMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 1529, "primary_knowledge_sources": { "infores:ubergraph": 1529 }, "qualifiers": {}, "attributes": { "id": 1529, "category": 1529, "knowledge_level": 1529, "agent_type": 1529, "original_subject": 1529, "original_object": 1529 }, "subject_id_prefixes": { "CHEBI": 1529 }, "object_id_prefixes": { "CHEBI": 1529 } }, { "subject_category": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:MolecularMixture" ], "count": 276, "primary_knowledge_sources": { "infores:ubergraph": 276 }, "qualifiers": {}, "attributes": { "id": 276, "category": 276, "knowledge_level": 276, "agent_type": 276, "original_subject": 276, "original_object": 276 }, "subject_id_prefixes": { "CHEBI": 276 }, "object_id_prefixes": { "CHEBI": 276 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalEntity" ], "count": 2050, "primary_knowledge_sources": { "infores:ubergraph": 2050 }, "qualifiers": {}, "attributes": { "id": 2050, "category": 2050, "knowledge_level": 2050, "agent_type": 2050, "original_subject": 2050, "original_object": 2050 }, "subject_id_prefixes": { "CHEBI": 1966, "UNII": 62, "PUBCHEM.COMPOUND": 22 }, "object_id_prefixes": { "CHEBI": 2050 } }, { "subject_category": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule" ], "count": 1183, "primary_knowledge_sources": { "infores:ubergraph": 1183 }, "qualifiers": {}, "attributes": { "id": 1183, "category": 1183, "knowledge_level": 1183, "agent_type": 1183, "original_subject": 1183, "original_object": 1183 }, "subject_id_prefixes": { "CHEBI": 1183 }, "object_id_prefixes": { "CHEBI": 1183 } }, { "subject_category": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalMixture" ], "count": 262, "primary_knowledge_sources": { "infores:ubergraph": 262 }, "qualifiers": {}, "attributes": { "id": 262, "category": 262, "knowledge_level": 262, "agent_type": 262, "original_subject": 262, "original_object": 262 }, "subject_id_prefixes": { "CHEBI": 262 }, "object_id_prefixes": { "CHEBI": 262 } }, { "subject_category": [ "biolink:AnatomicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Disease" ], "count": 2, "primary_knowledge_sources": { "infores:ubergraph": 2 }, "qualifiers": {}, "attributes": { "id": 2, "category": 2, "knowledge_level": 2, "agent_type": 2, "original_subject": 2, "original_object": 2 }, "subject_id_prefixes": { "UMLS": 2 }, "object_id_prefixes": { "MONDO": 2 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:MolecularMixture" ], "count": 118, "primary_knowledge_sources": { "infores:ubergraph": 118 }, "qualifiers": {}, "attributes": { "id": 118, "category": 118, "knowledge_level": 118, "agent_type": 118, "original_subject": 118, "original_object": 118 }, "subject_id_prefixes": { "CHEBI": 118 }, "object_id_prefixes": { "CHEBI": 118 } }, { "subject_category": [ "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalMixture" ], "count": 16, "primary_knowledge_sources": { "infores:ubergraph": 16 }, "qualifiers": {}, "attributes": { "id": 16, "category": 16, "knowledge_level": 16, "agent_type": 16, "original_subject": 16, "original_object": 16 }, "subject_id_prefixes": { "CHEBI": 16 }, "object_id_prefixes": { "CHEBI": 16 } }, { "subject_category": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:MolecularMixture" ], "count": 57, "primary_knowledge_sources": { "infores:ubergraph": 57 }, "qualifiers": {}, "attributes": { "id": 57, "category": 57, "knowledge_level": 57, "agent_type": 57, "original_subject": 57, "original_object": 57 }, "subject_id_prefixes": { "CHEBI": 57 }, "object_id_prefixes": { "CHEBI": 57 } }, { "subject_category": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "count": 90, "primary_knowledge_sources": { "infores:ubergraph": 90 }, "qualifiers": {}, "attributes": { "id": 90, "category": 90, "knowledge_level": 90, "agent_type": 90, "original_subject": 90, "original_object": 90 }, "subject_id_prefixes": { "CHEBI": 90 }, "object_id_prefixes": { "CHEBI": 85, "PUBCHEM.COMPOUND": 5 } }, { "subject_category": [ "biolink:ChemicalMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule" ], "count": 25, "primary_knowledge_sources": { "infores:ubergraph": 25 }, "qualifiers": {}, "attributes": { "id": 25, "category": 25, "knowledge_level": 25, "agent_type": 25, "original_subject": 25, "original_object": 25 }, "subject_id_prefixes": { "CHEBI": 25 }, "object_id_prefixes": { "CHEBI": 25 } }, { "subject_category": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Drug" ], "count": 18, "primary_knowledge_sources": { "infores:ubergraph": 18 }, "qualifiers": {}, "attributes": { "id": 18, "category": 18, "knowledge_level": 18, "agent_type": 18, "original_subject": 18, "original_object": 18 }, "subject_id_prefixes": { "CHEBI": 18 }, "object_id_prefixes": { "CHEBI": 18 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "count": 73, "primary_knowledge_sources": { "infores:ubergraph": 73 }, "qualifiers": {}, "attributes": { "id": 73, "category": 73, "knowledge_level": 73, "agent_type": 73, "original_subject": 73, "original_object": 73 }, "subject_id_prefixes": { "CHEBI": 73 }, "object_id_prefixes": { "CHEBI": 73 } }, { "subject_category": [ "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule" ], "count": 83, "primary_knowledge_sources": { "infores:ubergraph": 83 }, "qualifiers": {}, "attributes": { "id": 83, "category": 83, "knowledge_level": 83, "agent_type": 83, "original_subject": 83, "original_object": 83 }, "subject_id_prefixes": { "CHEBI": 79, "PUBCHEM.COMPOUND": 4 }, "object_id_prefixes": { "CHEBI": 83 } }, { "subject_category": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Protein" ], "count": 151, "primary_knowledge_sources": { "infores:ubergraph": 151 }, "qualifiers": {}, "attributes": { "id": 151, "category": 151, "knowledge_level": 151, "agent_type": 151, "original_subject": 151, "original_object": 151 }, "subject_id_prefixes": { "CHEBI": 151 }, "object_id_prefixes": { "PR": 151 } }, { "subject_category": [ "biolink:AnatomicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:PhenotypicFeature" ], "count": 15, "primary_knowledge_sources": { "infores:ubergraph": 15 }, "qualifiers": {}, "attributes": { "id": 15, "category": 15, "knowledge_level": 15, "agent_type": 15, "original_subject": 15, "original_object": 15 }, "subject_id_prefixes": { "UMLS": 15 }, "object_id_prefixes": { "NCIT": 10, "EFO": 5 } }, { "subject_category": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "count": 78, "primary_knowledge_sources": { "infores:ubergraph": 78 }, "qualifiers": {}, "attributes": { "id": 78, "category": 78, "knowledge_level": 78, "agent_type": 78, "original_subject": 78, "original_object": 78 }, "subject_id_prefixes": { "CHEBI": 78 }, "object_id_prefixes": { "CHEBI": 77, "PUBCHEM.COMPOUND": 1 } }, { "subject_category": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Protein" ], "count": 39, "primary_knowledge_sources": { "infores:ubergraph": 39 }, "qualifiers": {}, "attributes": { "id": 39, "category": 39, "knowledge_level": 39, "agent_type": 39, "original_subject": 39, "original_object": 39 }, "subject_id_prefixes": { "CHEBI": 39 }, "object_id_prefixes": { "PR": 39 } }, { "subject_category": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:AnatomicalEntity" ], "count": 21, "primary_knowledge_sources": { "infores:ubergraph": 21 }, "qualifiers": {}, "attributes": { "id": 21, "category": 21, "knowledge_level": 21, "agent_type": 21, "original_subject": 21, "original_object": 21 }, "subject_id_prefixes": { "MONDO": 21 }, "object_id_prefixes": { "UBERON": 12, "UMLS": 9 } }, { "subject_category": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "count": 41, "primary_knowledge_sources": { "infores:ubergraph": 41 }, "qualifiers": {}, "attributes": { "id": 41, "category": 41, "knowledge_level": 41, "agent_type": 41, "original_subject": 41, "original_object": 41 }, "subject_id_prefixes": { "CHEBI": 41 }, "object_id_prefixes": { "CHEBI": 41 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalMixture" ], "count": 65, "primary_knowledge_sources": { "infores:ubergraph": 65 }, "qualifiers": {}, "attributes": { "id": 65, "category": 65, "knowledge_level": 65, "agent_type": 65, "original_subject": 65, "original_object": 65 }, "subject_id_prefixes": { "CHEBI": 65 }, "object_id_prefixes": { "CHEBI": 65 } }, { "subject_category": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:GrossAnatomicalStructure" ], "count": 18, "primary_knowledge_sources": { "infores:ubergraph": 18 }, "qualifiers": {}, "attributes": { "id": 18, "category": 18, "knowledge_level": 18, "agent_type": 18, "original_subject": 18, "original_object": 18 }, "subject_id_prefixes": { "MONDO": 18 }, "object_id_prefixes": { "UBERON": 18 } }, { "subject_category": [ "biolink:SmallMolecule" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Drug" ], "count": 24, "primary_knowledge_sources": { "infores:ubergraph": 24 }, "qualifiers": {}, "attributes": { "id": 24, "category": 24, "knowledge_level": 24, "agent_type": 24, "original_subject": 24, "original_object": 24 }, "subject_id_prefixes": { "CHEBI": 24 }, "object_id_prefixes": { "CHEBI": 24 } }, { "subject_category": [ "biolink:AnatomicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:CellularComponent" ], "count": 26, "primary_knowledge_sources": { "infores:ubergraph": 26 }, "qualifiers": {}, "attributes": { "id": 26, "category": 26, "knowledge_level": 26, "agent_type": 26, "original_subject": 26, "original_object": 26 }, "subject_id_prefixes": { "UBERON": 26 }, "object_id_prefixes": { "GO": 24, "MESH": 1, "UMLS": 1 } }, { "subject_category": [ "biolink:GrossAnatomicalStructure" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:CellularComponent" ], "count": 29, "primary_knowledge_sources": { "infores:ubergraph": 29 }, "qualifiers": {}, "attributes": { "id": 29, "category": 29, "knowledge_level": 29, "agent_type": 29, "original_subject": 29, "original_object": 29 }, "subject_id_prefixes": { "UBERON": 29 }, "object_id_prefixes": { "GO": 29 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule" ], "count": 99, "primary_knowledge_sources": { "infores:ubergraph": 99 }, "qualifiers": {}, "attributes": { "id": 99, "category": 99, "knowledge_level": 99, "agent_type": 99, "original_subject": 99, "original_object": 99 }, "subject_id_prefixes": { "CHEBI": 96, "UNII": 3 }, "object_id_prefixes": { "CHEBI": 99 } }, { "subject_category": [ "biolink:CellularComponent" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Cell" ], "count": 3, "primary_knowledge_sources": { "infores:ubergraph": 3 }, "qualifiers": {}, "attributes": { "id": 3, "category": 3, "knowledge_level": 3, "agent_type": 3, "original_subject": 3, "original_object": 3 }, "subject_id_prefixes": { "GO": 3 }, "object_id_prefixes": { "CL": 2, "UMLS": 1 } }, { "subject_category": [ "biolink:Disease" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Cell" ], "count": 24, "primary_knowledge_sources": { "infores:ubergraph": 24 }, "qualifiers": {}, "attributes": { "id": 24, "category": 24, "knowledge_level": 24, "agent_type": 24, "original_subject": 24, "original_object": 24 }, "subject_id_prefixes": { "MONDO": 15, "EFO": 9 }, "object_id_prefixes": { "UMLS": 22, "CL": 2 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "count": 1, "primary_knowledge_sources": { "infores:ubergraph": 1 }, "qualifiers": {}, "attributes": { "id": 1, "category": 1, "knowledge_level": 1, "agent_type": 1, "original_subject": 1, "original_object": 1 }, "subject_id_prefixes": { "CHEBI": 1 }, "object_id_prefixes": { "CHEBI": 1 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Protein" ], "count": 2, "primary_knowledge_sources": { "infores:ubergraph": 2 }, "qualifiers": {}, "attributes": { "id": 2, "category": 2, "knowledge_level": 2, "agent_type": 2, "original_subject": 2, "original_object": 2 }, "subject_id_prefixes": { "CHEBI": 2 }, "object_id_prefixes": { "PR": 2 } }, { "subject_category": [ "biolink:Cell" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:GrossAnatomicalStructure" ], "count": 20, "primary_knowledge_sources": { "infores:ubergraph": 20 }, "qualifiers": {}, "attributes": { "id": 20, "category": 20, "knowledge_level": 20, "agent_type": 20, "original_subject": 20, "original_object": 20 }, "subject_id_prefixes": { "CL": 13, "UMLS": 5, "NCIT": 2 }, "object_id_prefixes": { "UBERON": 20 } }, { "subject_category": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "count": 5, "primary_knowledge_sources": { "infores:ubergraph": 5 }, "qualifiers": {}, "attributes": { "id": 5, "category": 5, "knowledge_level": 5, "agent_type": 5, "original_subject": 5, "original_object": 5 }, "subject_id_prefixes": { "CHEBI": 5 }, "object_id_prefixes": { "CHEBI": 5 } }, { "subject_category": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Drug" ], "count": 25, "primary_knowledge_sources": { "infores:ubergraph": 25 }, "qualifiers": {}, "attributes": { "id": 25, "category": 25, "knowledge_level": 25, "agent_type": 25, "original_subject": 25, "original_object": 25 }, "subject_id_prefixes": { "CHEBI": 25 }, "object_id_prefixes": { "CHEBI": 25 } }, { "subject_category": [ "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Protein" ], "count": 1, "primary_knowledge_sources": { "infores:ubergraph": 1 }, "qualifiers": {}, "attributes": { "id": 1, "category": 1, "knowledge_level": 1, "agent_type": 1, "original_subject": 1, "original_object": 1 }, "subject_id_prefixes": { "CHEBI": 1 }, "object_id_prefixes": { "PR": 1 } }, { "subject_category": [ "biolink:Cell" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Disease" ], "count": 5, "primary_knowledge_sources": { "infores:ubergraph": 5 }, "qualifiers": {}, "attributes": { "id": 5, "category": 5, "knowledge_level": 5, "agent_type": 5, "original_subject": 5, "original_object": 5 }, "subject_id_prefixes": { "UMLS": 5 }, "object_id_prefixes": { "MONDO": 3, "EFO": 2 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:MolecularMixture" ], "count": 2, "primary_knowledge_sources": { "infores:ubergraph": 2 }, "qualifiers": {}, "attributes": { "id": 2, "category": 2, "knowledge_level": 2, "agent_type": 2, "original_subject": 2, "original_object": 2 }, "subject_id_prefixes": { "CHEBI": 2 }, "object_id_prefixes": { "CHEBI": 2 } }, { "subject_category": [ "biolink:AnatomicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Cell" ], "count": 10, "primary_knowledge_sources": { "infores:ubergraph": 10 }, "qualifiers": {}, "attributes": { "id": 10, "category": 10, "knowledge_level": 10, "agent_type": 10, "original_subject": 10, "original_object": 10 }, "subject_id_prefixes": { "UBERON": 6, "UMLS": 4 }, "object_id_prefixes": { "UMLS": 6, "CL": 4 } }, { "subject_category": [ "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "count": 1, "primary_knowledge_sources": { "infores:ubergraph": 1 }, "qualifiers": {}, "attributes": { "id": 1, "category": 1, "knowledge_level": 1, "agent_type": 1, "original_subject": 1, "original_object": 1 }, "subject_id_prefixes": { "CHEBI": 1 }, "object_id_prefixes": { "CHEBI": 1 } }, { "subject_category": [ "biolink:GrossAnatomicalStructure" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Disease" ], "count": 3, "primary_knowledge_sources": { "infores:ubergraph": 3 }, "qualifiers": {}, "attributes": { "id": 3, "category": 3, "knowledge_level": 3, "agent_type": 3, "original_subject": 3, "original_object": 3 }, "subject_id_prefixes": { "UBERON": 3 }, "object_id_prefixes": { "MONDO": 3 } }, { "subject_category": [ "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:MolecularMixture" ], "count": 1, "primary_knowledge_sources": { "infores:ubergraph": 1 }, "qualifiers": {}, "attributes": { "id": 1, "category": 1, "knowledge_level": 1, "agent_type": 1, "original_subject": 1, "original_object": 1 }, "subject_id_prefixes": { "CHEBI": 1 }, "object_id_prefixes": { "CHEBI": 1 } }, { "subject_category": [ "biolink:ChemicalEntity" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalMixture" ], "count": 2, "primary_knowledge_sources": { "infores:ubergraph": 2 }, "qualifiers": {}, "attributes": { "id": 2, "category": 2, "knowledge_level": 2, "agent_type": 2, "original_subject": 2, "original_object": 2 }, "subject_id_prefixes": { "CHEBI": 2 }, "object_id_prefixes": { "CHEBI": 2 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:SmallMolecule", "biolink:Drug" ], "count": 1, "primary_knowledge_sources": { "infores:ubergraph": 1 }, "qualifiers": {}, "attributes": { "id": 1, "category": 1, "knowledge_level": 1, "agent_type": 1, "original_subject": 1, "original_object": 1 }, "subject_id_prefixes": { "CHEBI": 1 }, "object_id_prefixes": { "CHEBI": 1 } }, { "subject_category": [ "biolink:SmallMolecule", "biolink:MolecularMixture" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:ChemicalMixture" ], "count": 2, "primary_knowledge_sources": { "infores:ubergraph": 2 }, "qualifiers": {}, "attributes": { "id": 2, "category": 2, "knowledge_level": 2, "agent_type": 2, "original_subject": 2, "original_object": 2 }, "subject_id_prefixes": { "CHEBI": 2 }, "object_id_prefixes": { "CHEBI": 2 } }, { "subject_category": [ "biolink:GrossAnatomicalStructure" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Cell" ], "count": 2, "primary_knowledge_sources": { "infores:ubergraph": 2 }, "qualifiers": {}, "attributes": { "id": 2, "category": 2, "knowledge_level": 2, "agent_type": 2, "original_subject": 2, "original_object": 2 }, "subject_id_prefixes": { "UBERON": 2 }, "object_id_prefixes": { "CL": 2 } }, { "subject_category": [ "biolink:Gene", "biolink:Protein" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Gene", "biolink:Protein" ], "count": 1, "primary_knowledge_sources": { "infores:ubergraph": 1 }, "qualifiers": {}, "attributes": { "id": 1, "category": 1, "knowledge_level": 1, "agent_type": 1, "original_subject": 1, "original_object": 1 }, "subject_id_prefixes": { "NCBIGene": 1 }, "object_id_prefixes": { "NCBIGene": 1 } }, { "subject_category": [ "biolink:Drug" ], "predicate": "biolink:subclass_of", "object_category": [ "biolink:Protein" ], "count": 1, "primary_knowledge_sources": { "infores:ubergraph": 1 }, "qualifiers": {}, "attributes": { "id": 1, "category": 1, "knowledge_level": 1, "agent_type": 1, "original_subject": 1, "original_object": 1 }, "subject_id_prefixes": { "CHEBI": 1 }, "object_id_prefixes": { "PR": 1 } } ], "edges_summary": { "total_count": 64233934, "predicates": { "biolink:subclass_of": 64233934 }, "primary_knowledge_sources": { "infores:ubergraph": 64233934 }, "predicates_by_knowledge_source": { "infores:ubergraph": { "biolink:subclass_of": 64233934 } }, "qualifiers": {}, "attributes": { "id": 64233934, "category": 64233934, "knowledge_level": 64233934, "agent_type": 64233934, "original_subject": 64233934, "original_object": 64233934 } } }, "biolinkVersion": "4.4.2", "babelVersion": "2025sep1", "distribution": [], "hasPart": [], "isBasedOn": [ { "@type": "Dataset", "identifier": "ubergraph", "name": "Ubergraph Ontological Hierarchy Reference Ingest Guide", "description": "Ubergraph is a unified OWL ontology integrating multiple biomedical ontologies including GO, UBERON, CL, CHEBI, HP, and others. It provides both redundant (with full inference closure for subclass relations) and non-redundant graph representations. This ingest uses the redundant version which contains complete transitive, reflexive subclass relations for ontological hierarchy reasoning.", "license": { "license_name": "CC0 1.0 Universal (CC0 1.0) Public Domain Dedication", "license_url": "https://raw.githubusercontent.com/INCATools/ubergraph/master/LICENSE.txt" }, "url": [ "Ubergraph Downloads: https://ubergraph.apps.renci.org/downloads/current/", "redundant-graph-table.tgz contains complete inference closure", "nonredundant-graph-table.tgz contains direct assertions only" ], "version": "2026-05-31" } ] }